New insights on phylogeography and distribution of painted frogs (Discoglossus) in northern Africa and the Iberian Peninsula

Painted frogs (Discoglossus) contain five to six species of Western Palearctic anurans that are mainly distributed in allopatry. We here provide the first comprehensive assessment of the phylogeography of the Moroccan species D. scovazzi and geographically characterize its contact zone with D. pictus in Eastern Morocco. Discoglossus scovazzi shows, in general, a weak phylogeographic structure across Morocco on the basis of mitochondrial DNA sequences of the cytochrome b gene, with only populations centered in the Atlas Mountains characterized by the presence of slightly divergent haplotypes. In eastern Morocco, all populations east of the Moulouya River were clearly assignable to D. pictus. This species was also found along the Mediterranean coast west of the Moulouya, in the cities of Nador and Melilla, suggesting that not the river itself but the wide arid valley extending along much of the river (except close to the estuary) acts as a possible distributional barrier to these frogs. No sympatry of D. scovazzi with D. pictus was observed, and all specimens were concordantly assigned to either species by DNA sequences of cytochrome b and of the nuclear marker RAG1. Species distribution models of the two taxa show largely overlapping areas of suitable habitat, and the two species’ niches are significantly more similar than would be expected given the underlying environmental differences between the regions in which they occur. Comparative data are also presented from the southern Iberian contact zone of D. galganoi galganoi and D. g. jeanneae. These taxa showed less clear-cut distributional borders, extensively shared RAG1 haplotypes, and had instances of sympatric occurrence on the basis of cytochrome b haplotypes, in agreement with the hypothesis of a yet incomplete speciation. In this wide contact zone area we found mitochondrial sequences containing double peaks in electropherograms, suggesting nuclear pseudogenes or (less likely) heteroplasmy, possibly related to the ongoing admixture among the lineagesPeer reviewe

Diversity, distribution and conservation of the terrestrial reptiles of Oman (Sauropsida, Squamata)

All authors: Salvador Carranza , Meritxell Xipell, Pedro Tarroso, Andrew Gardner, Edwin Nicholas Arnold, Michael D. Robinson, Marc Simó-Riudalbas, Raquel Vasconcelos, Philip de Pous, Fèlix Amat, Jiří Šmíd, Roberto Sindaco, Margarita Metallinou †, Johannes Els, Juan Manuel Pleguezuelos, Luis Machado, David Donaire, Gabriel Martínez, Joan Garcia-Porta, Tomáš Mazuch, Thomas Wilms, Jürgen Gebhart, Javier Aznar, Javier Gallego, Bernd-Michael Zwanzig, Daniel Fernández-Guiberteau, Theodore Papenfuss, Saleh Al Saadi, Ali Alghafri, Sultan Khalifa, Hamed Al Farqani, Salim Bait Bilal, Iman Sulaiman Alazri, Aziza Saud Al Adhoobi, Zeyana Salim Al Omairi, Mohammed Al Shariani, Ali Al Kiyumi, Thuraya Al Sariri, Ahmed Said Al Shukaili, Suleiman Nasser Al Akhzami.In the present work, we use an exceptional database including 5,359 records of 101 species of Oman’s terrestrial reptiles together with spatial tools to infer the spatial patterns of species richness and endemicity, to infer the habitat preference of each species and to better define conservation priorities, with especial focus on the effectiveness of the protected areas in preserving this unique arid fauna. Our results indicate that the sampling effort is not only remarkable from a taxonomic point of view, with multiple observations for most species, but also for the spatial coverage achieved. The observations are distributed almost continuously across the two-dimensional climatic space of Oman defined by the mean annual temperature and the total annual precipitation and across the Principal Component Analysis (PCA) of the multivariate climatic space and are well represented within 17 out of the 20 climatic clusters grouping 10% of the explained climatic variance defined by PC1 and PC2. Species richness is highest in the Hajar and Dhofar Mountains, two of the most biodiverse areas of the Arabian Peninsula, and endemic species richness is greatest in the Jebel Akhdar, the highest part of the Hajar Mountains. Oman’s 22 protected areas cover only 3.91% of the country, including within their limits 63.37% of terrestrial reptiles and 50% of all endemics. Our analyses show that large areas of the climatic space of Oman lie outside protected areas and that seven of the 20 climatic clusters are not protected at all. The results of the gap analysis indicate that most of the species are below the conservation target of 17% or even the less restrictive 12% of their total area within a protected area in order to be considered adequately protected. Therefore, an evaluation of the coverage of the current network of protected areas and the identification of priority protected areas for reptiles using reserve design algorithms are urgently needed. Our study also shows that more than half of the species are still pending of a definitive evaluation by the International Union for Conservation of Nature (IUCN).This work was funded by grants CGL2012-36970, CGL2015-70390-P from the Ministerio de Economía y Competitividad, Spain (cofunded by FEDER) to SC, the project Field study for the conservation of reptiles in Oman, Ministry of Environment and Climate Affairs, Oman (Ref: 22412027) to SC and grant 2014-SGR-1532 from the Secretaria d'Universitats i Recerca del Departament d'Economia i Coneixement de la Generalitat de Catalunya to SC. MSR is funded by a FPI grant from the Ministerio de Economía y Competitividad, Spain (BES-2013-064248); RV, PT and LM were funded by Fundação para a Ciência e Tecnologia (FCT) through post-doc grants (SFRH/BPD/79913/2011) to RV, (SFRH/BPD/93473/2013) to PT and PhD grant (SFRH/BD/89820/2012) to LM, financed by Programa Operacional Potencial Humano (POPH) – Quadro de Referência Estrategico Nacional (QREN) from the European Social Fund and Portuguese Ministerio da Educação e Ciência

Integrating geospatial methods into evolutionary biology and conservation: case studies on selected Western Palearctic herpetofauna

Many evolutionary processes are influenced by spatio-temporal environmental variation, including speciation, genetic divergence among populations, and evolutionary change in physiology, morphology and behaviour. However, despite the extensive environmental data available from Geographic Information Systems (GIS) most evolutionary biologists and conservationists have not taken advantage of this data until recently. The general objective of this thesis was to integrate and expand the use of geospatial methods in evolutionary biology (biogeography, phylogeography and systematics) and conservation research. This general objective was accomplished through three specific objectives spread over six chapters, which compromised both methodological developments and their application in a series of case studies on Western Palearctic herpetofauna. This thesis explored and successfully used a number of promising new geospatial methods in combination with more traditional molecular analyses. Such integrative approaches will ultimately allow us to better consider and examine the range of potential histories underlying both inter and intraspecific divergence patterns.Molts processos evolutius estan influïts per variació ambiental-, incloent l’especiació, espai-temporal, divergència genètica entre poblacions, així com el canvi evolutiu en fisiologia, morfologia i comportament. No obstant això, malgrat l'àmplia quantitat de dades ambientals disponibles en els Sistemes d'Informació Geogràfica (SIG), la majoria dels biòlegs i conservacionistes no han aprofitat aquestes dades fins fa poc. L'objectiu general d'aquesta tesi és integrar i ampliar l'ús de mètodes geoespacials en biologia evolutiva (biogeografia, filogeografia i sistemàtica) i recerca de conservació. Aquest objectiu general es va aconseguir a través de tres objectius específics dividits en 6 capítols, els quals inclouen tant un desenvolupament metodològic i la seva aplicació en una sèrie de casos d'estudi espaciotemporals de herpetofauna paleárctica occidental. Aquesta tesi explora i utilitza de manera reeixida nous mètodes geoespacials en combinació amb anàlisis moleculars tradicionals. Aquests enfocament combinats ens permeten avaluar i examinar de millor manera les diverses possibles històries que hi ha al darrere patrons divergents inter i intraespecífics.Muchos procesos evolutivos están influidos por variación ambiental espaciotemporal, incluyendo la especiación, divergencia genética entre poblaciones, así como el cambio evolutivo en fisiología, morfología y comportamiento. Sin embargo, a pesar de la amplia cantidad de datos ambientales disponibles en los Sistemas de Información Geográfica (SIG), la mayoría de los biólogos y conservacionistas no han aprovechado estos datos sino hasta hace poco. El objetivo general de esta tesis es integrar y ampliar el uso de métodos geoespaciales en biología evolutiva (biogeografía, filogeografía y sistemática) e investigación de conservación. Este objetivo general se logró a través de tres objetivos específicos divididos en 6 capítulos, los cuales incluyen tanto un desarrollo metodológico y su aplicación en una serie de casos de estudio espaciotemporales de herpetofauna paleárctica occidental. Esta tesis explora y utiliza de manera éxitosa nuevos métodos geoespaciales en combinación con análisis moleculares tradicionales. Estos enfoque combinados nos permiten evaluar y examinar de mejor manera las diversas posibles historias que subyacen en patrones divergentes inter e intraespecíficos

Phylogeographic patterns of genetic diversity in the common spadefoot toad, Pelobates fuscus (Anura: Pelobatidae), reveals evolutionary history, postglacial range expansion and secondary contact

Litvinchuk, S. N. et al.Based on allozyme variation of 410 newly collected individuals from 52 localities, we reconstructed range-wide phylogeography of the widespread Western Palearctic anuran, Pelobates fuscus. To study genetic diversity, evolutionary history, postglacial range expansion and secondary contact zones, we used a multidisciplinary approach combining information from various genetic analyses and ecological niche modeling. We confirmed the presence of two main groups in P. fuscus, initially revealed by genome size variation. Pelobates f. vespertinus presents a monomorphic group, but two main groups can be identified in P. f. fuscus: an East European and a West European group. We suggest the existence of at least four different Last Glacial refugia for P. fuscus: (1) the area between the Caspian and Azov Seas as the origin for the expansion of P. f. vespertinus; (2) the northwestern part of the Black Sea area for the East European P. f. fuscus; (3) the southwestern part of the Pannonian Plain and (4) the Po Plain for the West European P. f. fuscus. The routes of postglacial range expansions from the refugia are discussed. We newly identified a hybrid zone between P. f. fuscus and P. f. vespertinus. The width of this zone is about 12.5 km. In light of these findings, the two subspecies of P. fuscus constitute distinct evolutionary lineages and merit recognition as separate species. Our data do not provide support for the validity of P.f. insubricus. We therefore propose to synonymize this subspecies with P. f. fuscus. © 2013 Gesellschaft für Biologische Systematik.The work was partially funded by grants from the Russian Foundation of Basic Research (project nos. 12-04-01277 and 13-04-90410) and the Serbian Ministry of Education and Science and Technological Development (project no. 173043). PdP was funded by the FI program (Generalitat de Catalunya, Spain) and a grant from the Societas Europaea Herpetologica (2010). The work of AC was supported by a postdoctoral grant from Fundação para a Ciência e a Tecnologia (SFRH/BPD/72908/2010).Peer Reviewe

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Figure showing the hypothetical relation with the energy landscape and gene flo

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A contribution to the atlas of the terrestrial herpetofauna of Sardinia

Here we report on the combined observations of 10 years of opportunistic field work conducted during short visits to Sardinia, from 1999 to 2012. A total amount of 433 distribution records of 27 species were collected from 187 different localities covering 52 unique UTM squares. We report species presence in 157 new UTM squares and additionally reconfirm previous reported presence in 150 UTM squares. Overall, we produce a remarkable increase in the knowledge of the Sardinian herpetofauna. Notes and observations on ecology, taxonomy and conservation are provided.Peer Reviewe

Area prioritization and performance evaluation of the conservation area network for the Moroccan herpetofauna : a preliminary assessment

The integration of spatial area prioritization algorithms and species distribution modelling has shown great promise in conservation planning in recent years. However, despite the fact that reptiles and amphibians have the highest threat status of all terrestrial vertebrates, these species are often under-represented in conservation planning. The Kingdom of Morocco possesses the richest and most varied herpetofauna in the Maghreb and the western Mediterranean, and is characterized by high species richness, endemism and number of European relict species. Despite the fact that Moroccan reptiles and amphibians have been the subject of numerous studies by a large number of international herpetologists since the beginning of the 20th century, few or none of these concerned their conservation. This study had three main objectives: (1) to identify those areas that harbour the highest species richness; (2) to evaluate the existing and proposed future 'important biological and ecological sites' (SIBES) conservation area network (CAN) with respect to their ability to protect the herpetofauna adequately; and (3) to identify priority areas into which the existing protected areas can be augmented. We used maximum-entropy species distribution modelling to run distribution models for 11 amphibian and 86 reptile species (27.6% endemics and 12.4% threatened) for which we had 2,170 single geographic records. A total of 97 models were used to create a richness map of the Moroccan herpetofauna and thereby detect both areas of high species richness and the distribution patterns of individual species. This map was subsequently used as a basis for performance evaluation of the CAN and area prioritization using the ConsNet conservation planning software initialized by "Rarity" first, while using representation targets of 5% and 10%. Additionally, the proposed future Moroccan CAN (SIBES) was evaluated in terms of its overlay and proximity with ConsNet solutions using visual interpretation and distance measurements in a GIS. Our results show that Moroccan herpetofauna is poorly protected under the existing and future CAN. Prioritization of areas shows that a major increase in conservation area is required to guarantee the persistence of individual herpetofauna species even with a global minimum representation target of only 10%. An increase of the existing CAN is especially needed along parts of the Atlantic coast, in the north-western Mediterranean region, on the north-eastern Moroccan coast, as well as in several areas in the Sahara, notably vast proportions of the Vallee du Haut and Bas Draa

Integrating mtDNA analyses and ecological niche modelling to infer the evolutionary history of Alytes maurus (Amphibia; Alytidae) from Morocco

We aimed at determining the effects of past climatic conditions on contemporary intraspecific genetic structuring of the endemic Moroccan midwife toad Alytes maurus using mitochondrial DNA (12S, 16S and cytochrome b) analysis and ecological niche modelling. Unexpectedly, our genetic analyses show that A. maurus presents a low level of variability in the mitochondrial genes with no clear geographical structuring. The low genetic variation in mtDNA can be explained by a much broader climatic suitability during the Last Glacial Maximum that allowed the connection among populations and subsequent homogenization as a consequence of gene flow.Peer Reviewe